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Protein Ontology report - plant U-box E3 ubiquitin ligase
PR:000035980 - http://purl.obolibrary.org/obo/PR_000035980
 
  Protein Forms  Annotations      
Ontology Information Show OBO stanza
  PRO ID
PR:000035980   
  PRO nameplant U-box E3 ubiquitin ligase 
  Synonyms
Other: EXACT:E3 ubiquitin-protein ligase, ARC1/SPL11 type | PUB
  Definition"A protein that contains a U-box domain (Pfam:PF04564) and Arm repeats (Pfam:PF00514). U-box protein is one type of E3 ubiquitin-protein ligase. E3 ubiquitin ligase plays an important role in the ubiquitin-proteasome pathway, since it recognizes target proteins for ubiquitination." [PIRSF:PIRSF017941, PMID:21680829
  PRO Categoryfamily 
  ParentPR:000036194 eukaryotic protein
  TaxonNCBITaxon:33090 Viridiplantae
  Terms by PRO Category
Organism-Independent Organism-Specific
         Category          Number of Terms          Category          Number of Terms
         Family1                                                  Organism-Family 0                                        
         Gene2                                                  Organism-Gene 2                                        
         Sequence0                                                  Organism-Sequence 0                                        
         Modification2                                                  Organism-Modification 2                                        
  Term Hierarchy
  Visualization
DAG: OLS:
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Related Cross References

  Db identifiers
PIRSF:PIRSF017941
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Protein Forms Switch to Compact View   

Category  

PRO ID

Name

Short Name

Definition

Ann. Has Annotation?

Comp. In Complex?
family



PR:000035980

plant U-box E3 ubiquitin ligase

At-PUB12/Phos:1


"A protein that contains a U-box domain (Pfam:PF04564) and Arm repeats (Pfam:PF00514). U-box protein is one type of E3 ubiquitin-protein ligase. E3 ubiquitin ligase plays an important role in the ubiquitin-proteasome pathway, since it recognizes target proteins for ubiquitination." [PIRSF:PIRSF017941, PMID:21680829]


gene



PR:000035959

U-box domain-containing protein 13

PUB13


"A plant U-box E3 ubiquitin ligase that is a translation product of the Arabidopsis thaliana PUB13 gene or a 1:1 ortholog thereof." [PMID:21680842, PRO:LVM]


organism-gene



PR:Q9SNC6

U-box domain-containing protein 13 (Arabidopsis thaliana)

At-PUB13


"A U-box domain-containing protein 13 that is encoded in the genome of Arabidopsis thaliana." [PRO:LVM]


organism-modification



PR:000035961

U-box domain-containing protein 13 phosphorylated 1 (Arabidopsis thaliana)

At-PUB13/Phos:1


"A U-box domain-containing protein 13 phosphorylated 1 in Arabidopsis thaliana." [PMID:21680842, PMID:25873653, PRO:CNA, PRO:LVM]

Yes

modification



PR:000035960

U-box domain-containing protein 13 phosphorylated 1

PUB13/Phos:1


"A U-box domain-containing protein 13 that has been phosphorylated within the ARM domain." [PMID:21680842, PMID:25873653, PRO:CNA, PRO:LVM]


organism-modification



PR:000035961

U-box domain-containing protein 13 phosphorylated 1 (Arabidopsis thaliana)

At-PUB13/Phos:1


"A U-box domain-containing protein 13 phosphorylated 1 in Arabidopsis thaliana." [PMID:21680842, PMID:25873653, PRO:CNA, PRO:LVM]

Yes

gene



PR:000035977

U-box domain-containing protein 12

PUB12


"A plant U-box E3 ubiquitin ligase that is a translation product of the Arabidopsis thaliana PUB12 gene or a 1:1 ortholog thereof." [PMID:21680842, PRO:LVM]


organism-gene



PR:Q9ZV31

U-box domain-containing protein 12 (Arabidopsis thaliana)

At-PUB12


"A U-box domain-containing protein 12 that is encoded in the genome of Arabidopsis thaliana." [PRO:LVM]


organism-modification



PR:000035979

U-box domain-containing protein 12 phosphorylated 1 (Arabidopsis thaliana)

At-PUB12/Phos:1


"A U-box domain-containing protein 12 phosphorylated 1 in Arabidopsis thaliana." [PMID:21680842, PRO:LVM]

Yes

modification



PR:000035978

U-box domain-containing protein 12 phosphorylated 1

PUB12/Phos:1


"A U-box domain-containing protein 12 that has been phosphorylated. Example: UniProtKB:Q9ZV31, MOD:00696." [PMID:21680842, PRO:LVM]


organism-modification



PR:000035979

U-box domain-containing protein 12 phosphorylated 1 (Arabidopsis thaliana)

At-PUB12/Phos:1


"A U-box domain-containing protein 12 phosphorylated 1 in Arabidopsis thaliana." [PMID:21680842, PRO:LVM]

Yes

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Functional Annotation (PRO-centric view) Switch to GO Centric View   
PRO Term GO Annotation Evidence
PR:000035961 At-PUB13/Phos:1 acts_upstream_of_or_withinGO:1900425 negative regulation of defense response to bacterium PMID:21680842
enablesGO:0004842 ubiquitin-protein transferase activity PMID:21680842
GO:0005515 protein binding with PR:Q9ZV31 At-PUB12 PMID:21680842
GO:0005515 protein binding PMID:21680842
located_inGO:0000151 ubiquitin ligase complex PMID:21680842
PR:000035979 At-PUB12/Phos:1 acts_upstream_of_or_withinGO:1900425 negative regulation of defense response to bacterium PMID:21680842
enablesGO:0004842 ubiquitin-protein transferase activity PMID:21680842
GO:0005515 protein binding with PR:Q9SNC6 At-PUB13 PMID:21680842
GO:0005515 protein binding PMID:21680842
located_inGO:0000151 ubiquitin ligase complex PMID:21680842